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  "Type": "Package",
  "Title": "Parse and Manipulate Research Patient Data Registry ('RPDR')\nText Queries",
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  "Date": "2025-01-19",
  "Authors@R": "person(\"Marton\", \"Kolossvary\", role = c(\"aut\", \"cre\"), email = \"mkolossvary@mgh.harvard.edu\")",
  "Maintainer": "Marton Kolossvary <mkolossvary@mgh.harvard.edu>",
  "Description": "Functions to load Research Patient Data Registry ('RPDR')\ntext queries from Partners Healthcare institutions into R. The\npackage also provides helper functions to manipulate data and\nexecute common procedures such as finding the closest\nradiological exams considering a given timepoint, or creating a\nDICOM header database from the downloaded images. All\nfunctionalities are parallelized for fast and efficient\nanalyses.",
  "License": "AGPL (>= 3)",
  "RoxygenNote": "7.3.2",
  "NeedsCompilation": "no",
  "Encoding": "UTF-8",
  "URL": "https://github.com/martonkolossvary/parseRPDR",
  "BugReports": "https://github.com/martonkolossvary/parseRPDR/issues",
  "Config/testthat/edition": "3",
  "Config/testthat/parallel": "false",
  "Config/testthat/start-first": "load_all_data, create_img_db, find_exam,\nload_*, convert_*",
  "Config/pak/sysreqs": "libicu-dev libx11-dev",
  "Repository": "https://martonkolossvary.r-universe.dev",
  "Date/Publication": "2025-01-26 09:10:33 UTC",
  "RemoteUrl": "https://github.com/martonkolossvary/parserpdr",
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    "User": "root"
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  "Author": "Marton Kolossvary [aut, cre]",
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    "description": "Head of Department of Education and Research at Gottsegen National Cardiovascular Center /\nLecturer at Óbuda University",
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    "description": "Head of Department of Education and Research at Gottsegen National Cardiovascular Center /\r\nLecturer at Óbuda University"
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    "convert_lab",
    "convert_med",
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    "convert_phy",
    "convert_prc",
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    "find_exam",
    "load_all",
    "load_all_data",
    "load_bib",
    "load_con",
    "load_dem",
    "load_dem_old",
    "load_dia",
    "load_enc",
    "load_lab",
    "load_lno",
    "load_mcm",
    "load_med",
    "load_mic",
    "load_mrn",
    "load_notes",
    "load_phy",
    "load_prc",
    "load_prv",
    "load_ptd",
    "load_rdt",
    "load_rfv",
    "load_trn",
    "pretty_mrn",
    "pretty_numbers",
    "pretty_text",
    "remove_column"
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      "title": "Legacy function to create a vector of all possible IDs for mi2b2 workbench",
      "topics": [
        "all_ids_mi2b2"
      ]
    },
    {
      "page": "convert_dia",
      "title": "Searches diagnosis columns for given diseases.",
      "topics": [
        "convert_dia"
      ]
    },
    {
      "page": "convert_enc",
      "title": "Searches columns for given diseases defined by ICD codes.",
      "topics": [
        "convert_enc"
      ]
    },
    {
      "page": "convert_lab",
      "title": "Converts lab results to normal/abnormal based-on reference values.",
      "topics": [
        "convert_lab"
      ]
    },
    {
      "page": "convert_med",
      "title": "Adds boolean columns corresponding to a group of medications whether it is present in the given row.",
      "topics": [
        "convert_med"
      ]
    },
    {
      "page": "convert_notes",
      "title": "Extracts information from notes free text.",
      "topics": [
        "convert_notes"
      ]
    },
    {
      "page": "convert_phy",
      "title": "Searches health history data for given codes",
      "topics": [
        "convert_phy"
      ]
    },
    {
      "page": "convert_prc",
      "title": "Searches procedures columns for given procedures.",
      "topics": [
        "convert_prc"
      ]
    },
    {
      "page": "convert_rfv",
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      "topics": [
        "convert_rfv"
      ]
    },
    {
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      "topics": [
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      ]
    },
    {
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      "title": "Exports free text notes to individual text files.",
      "topics": [
        "export_notes"
      ]
    },
    {
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      "title": "Find exam data within a given timeframe using parallel CPU computing.",
      "topics": [
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      ]
    },
    {
      "page": "load_all",
      "title": "Loads allergy data information into R.",
      "topics": [
        "load_all"
      ]
    },
    {
      "page": "load_all_data",
      "title": "Loads all RPDR text outputs into R.",
      "topics": [
        "load_all_data"
      ]
    },
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      "title": "Loads BiobankFile data into R.",
      "topics": [
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      ]
    },
    {
      "page": "load_con",
      "title": "Loads contact information into R.",
      "topics": [
        "load_con"
      ]
    },
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      "page": "load_dem",
      "title": "Loads demographic information into R for new demographic tables following changes in the beginning of 2022.",
      "topics": [
        "load_dem"
      ]
    },
    {
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      "title": "Loads demographic information into R for demographics tables before 2022.",
      "topics": [
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      ]
    },
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      "title": "Loads diagnoses into R.",
      "topics": [
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      ]
    },
    {
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      "title": "Loads encounter information into R.",
      "topics": [
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      ]
    },
    {
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      "topics": [
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      "topics": [
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      "topics": [
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      "topics": [
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      "topics": [
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      "topics": [
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      "title": "Removes spaces, special characters and capitals from string vector.",
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